NM task-centric program program list - Revision history

Nick: /* Multi-file */

2011-08-06T16:28:27Z

Multi-file

← Older revision		Revision as of 16:28, 6 August 2011
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	* Element by element minimum or maximum of two RSF files: [http://reproducibility.org/RSF/sfminmax.html minmax]		* Element by element minimum or maximum of two RSF files: [http://reproducibility.org/RSF/sfminmax.html minmax]
	* Similarity measure between two datasets: [http://reproducibility.org/RSF/sfsimilarity.html similarity]		* Similarity measure between two datasets: [http://reproducibility.org/RSF/sfsimilarity.html similarity]
			* 2-D histogram (inputs from 2 files): [http://reproducibility.org/RSF/sfhist2.html hist2]

	= Mathematics algorithms =		= Mathematics algorithms =

Nick: /* Single-file */

2011-08-06T16:28:01Z

Single-file

← Older revision		Revision as of 16:28, 6 August 2011
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	==Single-file==		==Single-file==
	* Display dataset attributes: [http://reproducibility.org/RSF/sfattr.html attr]		* Display dataset attributes: [http://reproducibility.org/RSF/sfattr.html attr]
	* ~~Compute a~~ histogram ~~of data values~~: [http://reproducibility.org/RSF/sfhistogram.html histogram]		* 1-D histogram: [http://reproducibility.org/RSF/sfhistogram.html histogram]
	* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]		* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]
	* Clip the data: [http://reproducibility.org/RSF/sfclip.html clip]		* Clip the data: [http://reproducibility.org/RSF/sfclip.html clip]

Nick: /* Interpolation */ fixed minor typo in link

2009-12-22T11:40:14Z

Interpolation: fixed minor typo in link

← Older revision		Revision as of 11:40, 22 December 2009
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	== Interpolation ==		== Interpolation ==
	* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [http://reproducibility.org/RSF/~~sfemap1~~.html remap1]		* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [http://reproducibility.org/RSF/sfremap1.html remap1]
	* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]		* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]

Nick: /* Basic mathematical processes */ added sfigrad

2009-11-23T18:06:02Z

Basic mathematical processes: added sfigrad

← Older revision		Revision as of 18:06, 23 November 2009
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	* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]		* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]
			* Derivative along the first axis: [http://reproducibility.org/RSF/sfigrad.html igrad]
	* Fast Fourier Transform along the first axis (from real to complex): [http://reproducibility.org/RSF/sffft1.html fft1]		* Fast Fourier Transform along the first axis (from real to complex): [http://reproducibility.org/RSF/sffft1.html fft1]
	* FFT transform on extra axis (from complex to complex): [http://reproducibility.org/RSF/sffft1.html fft3]		* FFT transform on extra axis (from complex to complex): [http://reproducibility.org/RSF/sffft1.html fft3]

Nick at 19:44, 10 January 2009

2009-01-10T19:44:31Z

← Older revision		Revision as of 19:44, 10 January 2009
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	List of Numerical Methods programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].		List of '''Numerical Methods''' programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].

	'''All program names below should be prefixed with "sf".'''		'''All program names below should be prefixed with "sf".'''

Nick at 19:44, 10 January 2009

2009-01-10T19:44:15Z

← Older revision		Revision as of 19:44, 10 January 2009
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	List of Numerical Methods programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].		List of Numerical Methods programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].

			'''All program names below should be prefixed with "sf".'''

	== Operation on file content ==		== Operation on file content ==

Nick: link to main task-centric page

2009-01-10T19:42:45Z

link to main task-centric page

← Older revision		Revision as of 19:42, 10 January 2009
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	List of Numerical Methods programs in Madagascar		List of Numerical Methods programs in Madagascar. An overview of all task-centric pages can be found in the main [[Task-centric program list]].

	== Operation on file content ==		== Operation on file content ==

Nick: links to wiki guides are put in man pages automatically now

2009-01-10T19:33:37Z

links to wiki guides are put in man pages automatically now

Nick: New page: List of Numerical Methods programs in Madagascar == Operation on file content == * Generate simple data (spikes, boxes, planes, constants): [[Guide_to_madagascar_programs#sfspike | spik...

2009-01-10T19:21:00Z

New page: List of Numerical Methods programs in Madagascar == Operation on file content == * Generate simple data (spikes, boxes, planes, constants): [[Guide_to_madagascar_programs#sfspike | spik...

New page

List of Numerical Methods programs in Madagascar

== Operation on file content ==

* Generate simple data (spikes, boxes, planes, constants): [[Guide_to_madagascar_programs#sfspike | spike guide]], [http://reproducibility.org/RSF/sfspike.html spike]
* Mathematical operations on data files: [[Guide_to_madagascar_programs#sfmath | math guide]], [http://reproducibility.org/RSF/sfmath.html math]
* Add, multiply, or divide RSF datasets: [[Guide_to_madagascar_programs#sfadd | add guide]], [http://reproducibility.org/RSF/sfadd.html add]
* Add, multiply, or divide RSF datasets (fast, OMP-enabled): [http://reproducibility.org/RSF/sfparadd.html paradd]
* Create a mask: [[Guide_to_madagascar_programs#sfmask | mask guide]], [http://reproducibility.org/RSF/sfmask.html mask]
* Scale data: [[Guide_to_madagascar_programs#sfscale | scale guide]], [http://reproducibility.org/RSF/sfscale.html scale]
* Rotate a portion of one or more axes in the data hypercube: [[Guide_to_madagascar_programs#sfrotate | rotate guide]], [http://reproducibility.org/RSF/sfrotate.html rotate]
* Zero a portion of the dataset: [[Guide_to_madagascar_programs#sfcut | cut guide]], [http://reproducibility.org/RSF/sfcut.html cut]
* Extend a dataset by duplicating in the specified axis dimension: [[Guide_to_madagascar_programs#sfspray | spray guide]], [http://reproducibility.org/RSF/sfspray.html spray]

==Complex number operations==
* Convert real data to complex (by adding zero imaginary part): [[Guide_to_madagascar_programs#sfrtoc | rtoc guide]], [http://reproducibility.org/RSF/sfrtoc.html rtoc]
* Extract real part of a complex dataset: [[Guide_to_madagascar_programs#sfreal | real guide]], [http://reproducibility.org/RSF/sfreal.html real]
* Extract imaginary part of a complex dataset: [http://reproducibility.org/RSF/sfreal.html imag]
* Create a complex dataset from its real and imaginary parts: [[Guide_to_madagascar_programs#sfcomplex | complex guide]], [http://reproducibility.org/RSF/sfcmplx.html cmplx]

=Statistical operations on files=
==Single-file==
* Display dataset attributes: [[Guide_to_madagascar_programs#sfattr | attr guide]], [http://reproducibility.org/RSF/sfattr.html attr]
* Compute a histogram of data values: [http://reproducibility.org/RSF/sfhistogram.html histogram]
* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]
* Clip the data: [http://reproducibility.org/RSF/sfclip.html clip]
* One- or two-sided data clipping: [http://reproducibility.org/RSF/sfclip2.html clip2]
* Percentile clip: [http://reproducibility.org/RSF/sfpclip.html pclip]
* Threshold float/complex inputs given a constant/varying threshold level: [http://reproducibility.org/RSF/sfthr.html thr]
* Soft thresholding: [http://reproducibility.org/RSF/sfthreshold.html threshold]
* Construct incremental minimum or maximum lists from an RSF file: [http://reproducibility.org/RSF/sflistminmax.html listminmax]
* Sort a float/complex vector by absolute values: [http://reproducibility.org/RSF/sfsort.html sort]

==Multi-file==
* Element by element minimum or maximum of two RSF files: [http://reproducibility.org/RSF/sfminmax.html minmax]
* Similarity measure between two datasets: [http://reproducibility.org/RSF/sfsimilarity.html similarity]

= Mathematics algorithms =

==Basic mathematic processes==

* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]
* Fast Fourier Transform along the first axis (from real to complex): [http://reproducibility.org/RSF/sffft1.html fft1]
* FFT transform on extra axis (from complex to complex): [http://reproducibility.org/RSF/sffft1.html fft3]
* 3D FFT with centering and Hermitian scaling: [http://reproducibility.org/RSF/sffft1.html fft3d]
* Frequency spectra: [http://reproducibility.org/RSF/sfspectra.html spectra]
* Frequency spectra in 2-D: [http://reproducibility.org/RSF/sfspectra2.html spectra2]
* 1-D Digital Wavelet Transform: [http://reproducibility.org/RSF/sfdwt.html dwt]
* Multi-dimensional cosine transform: [http://reproducibility.org/RSF/sfcosft.html cosft]

==Linear Algebra==

* Simple matrix multiplication: [http://reproducibility.org/RSF/sfmatmult.html matmult]
* Simple matrix multiplication for complex matrices: [http://reproducibility.org/RSF/sfcmatmult.html cmatmult]
* Find eigenvalues and eigenvectors of a symmetric positive definite matrix: [http://reproducibility.org/RSF/sfdmeig.html dmeig]
* Kroneker product with square matrices: [http://reproducibility.org/RSF/sfkron.html kron]
* Generic conjugate-gradient solver for linear inversion: [[Guide_to_madagascar_programs#sfconjgrad | conjgrad guide]], [http://reproducibility.org/RSF/sfconjgrad.html conjgrad]
* Generic dot-product test for linear operators with adjoints: [[Guide_to_madagascar_programs#sfdottest | dottest guide]], [http://reproducibility.org/RSF/sfdottest.html dottest]
* Generic conjugate-gradient solver for linear inversion with complex data: [http://reproducibility.org/RSF/sfcconjgrad.html cconjgrad]
* Generic dot-product test for complex linear operators with adjoints: [http://reproducibility.org/RSF/sfcdottest.html cdottest]
* Stack a dataset over one of the dimensions: [[Guide_to_madagascar_programs#sfstack | stack guide]], [http://reproducibility.org/RSF/sfstack.html stack]
* Transpose two axes in a dataset: [[Guide_to_madagascar_programs#sftransp | transp guide]], [http://reproducibility.org/RSF/sftransp.html transp]

== Interpolation ==
* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [[Guide_to_madagascar_programs#sfremap1 | remap1 guide]], [http://reproducibility.org/RSF/sfemap1.html remap1]
* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]

← Older revision		Revision as of 19:33, 10 January 2009
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	== Operation on file content ==		== Operation on file content ==

	* Generate simple data (spikes, boxes, planes, constants): ~~[[Guide_to_madagascar_programs#sfspike \| spike guide]],~~ [http://reproducibility.org/RSF/sfspike.html spike]		* Generate simple data (spikes, boxes, planes, constants): [http://reproducibility.org/RSF/sfspike.html spike]
	* Mathematical operations on data files: ~~[[Guide_to_madagascar_programs#sfmath \| math guide]],~~ [http://reproducibility.org/RSF/sfmath.html math]		* Mathematical operations on data files: [http://reproducibility.org/RSF/sfmath.html math]
	* Add, multiply, or divide RSF datasets: ~~[[Guide_to_madagascar_programs#sfadd \| add guide]],~~ [http://reproducibility.org/RSF/sfadd.html add]		* Add, multiply, or divide RSF datasets: [http://reproducibility.org/RSF/sfadd.html add]
	* Add, multiply, or divide RSF datasets (fast, OMP-enabled): [http://reproducibility.org/RSF/sfparadd.html paradd]		* Add, multiply, or divide RSF datasets (fast, OMP-enabled): [http://reproducibility.org/RSF/sfparadd.html paradd]
	* Create a mask: ~~[[Guide_to_madagascar_programs#sfmask \| mask guide]],~~ [http://reproducibility.org/RSF/sfmask.html mask]		* Create a mask: [http://reproducibility.org/RSF/sfmask.html mask]
	* Scale data: ~~[[Guide_to_madagascar_programs#sfscale \| scale guide]],~~ [http://reproducibility.org/RSF/sfscale.html scale]		* Scale data: [http://reproducibility.org/RSF/sfscale.html scale]
	* Rotate a portion of one or more axes in the data hypercube: ~~[[Guide_to_madagascar_programs#sfrotate \| rotate guide]],~~ [http://reproducibility.org/RSF/sfrotate.html rotate]		* Rotate a portion of one or more axes in the data hypercube: [http://reproducibility.org/RSF/sfrotate.html rotate]
	* Zero a portion of the dataset: ~~[[Guide_to_madagascar_programs#sfcut \| cut guide]],~~ [http://reproducibility.org/RSF/sfcut.html cut]		* Zero a portion of the dataset: [http://reproducibility.org/RSF/sfcut.html cut]
	* Extend a dataset by duplicating in the specified axis dimension: ~~[[Guide_to_madagascar_programs#sfspray \| spray guide]],~~ [http://reproducibility.org/RSF/sfspray.html spray]		* Extend a dataset by duplicating in the specified axis dimension: [http://reproducibility.org/RSF/sfspray.html spray]

	==Complex number operations==		==Complex number operations==
	* Convert real data to complex (by adding zero imaginary part): ~~[[Guide_to_madagascar_programs#sfrtoc \| rtoc guide]],~~ [http://reproducibility.org/RSF/sfrtoc.html rtoc]		* Convert real data to complex (by adding zero imaginary part): [http://reproducibility.org/RSF/sfrtoc.html rtoc]
	* Extract real part of a complex dataset: ~~[[Guide_to_madagascar_programs#sfreal \| real guide]],~~ [http://reproducibility.org/RSF/sfreal.html real]		* Extract real part of a complex dataset: [http://reproducibility.org/RSF/sfreal.html real]
	* Extract imaginary part of a complex dataset: [http://reproducibility.org/RSF/sfreal.html imag]		* Extract imaginary part of a complex dataset: [http://reproducibility.org/RSF/sfreal.html imag]
	* Create a complex dataset from its real and imaginary parts: ~~[[Guide_to_madagascar_programs#sfcomplex \| complex guide]],~~ [http://reproducibility.org/RSF/sfcmplx.html cmplx]		* Create a complex dataset from its real and imaginary parts: [http://reproducibility.org/RSF/sfcmplx.html cmplx]

	=Statistical operations on files=		=Statistical operations on files=
	==Single-file==		==Single-file==
	* Display dataset attributes: ~~[[Guide_to_madagascar_programs#sfattr \| attr guide]],~~ [http://reproducibility.org/RSF/sfattr.html attr]		* Display dataset attributes: [http://reproducibility.org/RSF/sfattr.html attr]
	* Compute a histogram of data values: [http://reproducibility.org/RSF/sfhistogram.html histogram]		* Compute a histogram of data values: [http://reproducibility.org/RSF/sfhistogram.html histogram]
	* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]		* Computes what clip value corresponds to a given pclip: [http://reproducibility.org/RSF/sfquantile.html quantile]
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	= Mathematics algorithms =		= Mathematics algorithms =

	==Basic ~~mathematic~~ processes==		==Basic mathematical processes==

	* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]		* Causal integration on the first axis: [http://reproducibility.org/RSF/sfcausint.html causint]
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	* Find eigenvalues and eigenvectors of a symmetric positive definite matrix: [http://reproducibility.org/RSF/sfdmeig.html dmeig]		* Find eigenvalues and eigenvectors of a symmetric positive definite matrix: [http://reproducibility.org/RSF/sfdmeig.html dmeig]
	* Kroneker product with square matrices: [http://reproducibility.org/RSF/sfkron.html kron]		* Kroneker product with square matrices: [http://reproducibility.org/RSF/sfkron.html kron]
	* Generic conjugate-gradient solver for linear inversion: ~~[[Guide_to_madagascar_programs#sfconjgrad \| conjgrad guide]],~~ [http://reproducibility.org/RSF/sfconjgrad.html conjgrad]		* Generic conjugate-gradient solver for linear inversion: [http://reproducibility.org/RSF/sfconjgrad.html conjgrad]
	* Generic dot-product test for linear operators with adjoints: ~~[[Guide_to_madagascar_programs#sfdottest \| dottest guide]],~~ [http://reproducibility.org/RSF/sfdottest.html dottest]		* Generic dot-product test for linear operators with adjoints: [http://reproducibility.org/RSF/sfdottest.html dottest]
	* Generic conjugate-gradient solver for linear inversion with complex data: [http://reproducibility.org/RSF/sfcconjgrad.html cconjgrad]		* Generic conjugate-gradient solver for linear inversion with complex data: [http://reproducibility.org/RSF/sfcconjgrad.html cconjgrad]
	* Generic dot-product test for complex linear operators with adjoints: [http://reproducibility.org/RSF/sfcdottest.html cdottest]		* Generic dot-product test for complex linear operators with adjoints: [http://reproducibility.org/RSF/sfcdottest.html cdottest]
	* Stack a dataset over one of the dimensions: ~~[[Guide_to_madagascar_programs#sfstack \| stack guide]],~~ [http://reproducibility.org/RSF/sfstack.html stack]		* Stack a dataset over one of the dimensions: [http://reproducibility.org/RSF/sfstack.html stack]
	* Transpose two axes in a dataset: ~~[[Guide_to_madagascar_programs#sftransp \| transp guide]],~~ [http://reproducibility.org/RSF/sftransp.html transp]		* Transpose two axes in a dataset: [http://reproducibility.org/RSF/sftransp.html transp]

	== Interpolation ==		== Interpolation ==
	* 1-D ENO (Essentiallly Non Oscillatory) interpolation: ~~[[Guide_to_madagascar_programs#sfremap1 \| remap1 guide]],~~ [http://reproducibility.org/RSF/sfemap1.html remap1]		* 1-D ENO (Essentiallly Non Oscillatory) interpolation: [http://reproducibility.org/RSF/sfemap1.html remap1]
	* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]		* 1-D sinc interpolation: [http://reproducibility.org/RSF/sfsinc.html sinc]